MRIQC: individual T1w report

Summary

Subject ID: 010_ExercisePre.
Date and time: 2018-05-06, 23:57.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.294508595967264
cnr			4.34733278751667
efc			0.6006259940135095
fber			71.59132385253906
fwhm	avg		3.892146666666667
fwhm	x		3.76038
fwhm	y		4.17034
fwhm	z		3.74572
icvs	csf		0.20053494278170247
icvs	gm		0.46967696232020406
icvs	wm		0.32978809489809346
inu	med		1.0863101482391357
inu	range		0.39585917592048636
qi	1		0.0
qi	2		0.0005486267886677623
rpve	csf		27.236307180947016
rpve	gm		13.124681925224486
rpve	wm		21.223621357148808
size	x		180
size	y		256
size	z		256
snr	csf		2.2531326059388803
snr	gm		10.319131277181839
snr	total		9.906636160094658
snr	wm		17.147644597163254
snrd	csf		10.91321882163503
snrd	gm		24.37472283153811
snrd	total		24.742220865499988
snrd	wm		38.93872094332682
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.1050510053820393
summary	bg	mad	16.824932098388672
summary	bg	mean	59.197872161865234
summary	bg	median	57.16649627685547
summary	bg	n	2947596.0
summary	bg	p05	34.2945671081543
summary	bg	p95	91.43732452392578
summary	bg	stdv	17.929868698120117
summary	csf	k	-0.029382375473565148
summary	csf	mad	134.855712890625
summary	csf	mean	292.4664001464844
summary	csf	median	280.26861572265625
summary	csf	n	8944.0
summary	csf	p05	111.3714973449707
summary	csf	p95	505.40397644042974
summary	csf	stdv	124.3836898803711
summary	gm	k	0.22288162231693542
summary	gm	mad	57.84809112548828
summary	gm	mean	627.1498413085938
summary	gm	median	625.981201171875
summary	gm	n	29056.0
summary	gm	p05	529.1339416503906
summary	gm	p95	730.3463134765625
summary	gm	stdv	60.661155700683594
summary	wm	k	1.4246900065488726
summary	wm	mad	52.30588912963867
summary	wm	mean	998.090576171875
summary	wm	median	1000.007568359375
summary	wm	n	153699.0
summary	wm	p05	898.3248046875
summary	wm	p95	1087.7540527343751
summary	wm	stdv	58.317298889160156
tpm	overlap	csf	0.2034771740436554
tpm	overlap	gm	0.5275136828422546
tpm	overlap	wm	0.5352588295936584
wm2max			0.6838831743426766

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	59cb8aceedf84a4d81e482c3529534d0
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.