MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.294508595967264
cnr4.34733278751667
efc0.6006259940135095
fber71.59132385253906
fwhmavg3.892146666666667
fwhmx3.76038
fwhmy4.17034
fwhmz3.74572
icvscsf0.20053494278170247
icvsgm0.46967696232020406
icvswm0.32978809489809346
inumed1.0863101482391357
inurange0.39585917592048636
qi10.0
qi20.0005486267886677623
rpvecsf27.236307180947016
rpvegm13.124681925224486
rpvewm21.223621357148808
sizex180
sizey256
sizez256
snrcsf2.2531326059388803
snrgm10.319131277181839
snrtotal9.906636160094658
snrwm17.147644597163254
snrdcsf10.91321882163503
snrdgm24.37472283153811
snrdtotal24.742220865499988
snrdwm38.93872094332682
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.1050510053820393
summarybgmad16.824932098388672
summarybgmean59.197872161865234
summarybgmedian57.16649627685547
summarybgn2947596.0
summarybgp0534.2945671081543
summarybgp9591.43732452392578
summarybgstdv17.929868698120117
summarycsfk-0.029382375473565148
summarycsfmad134.855712890625
summarycsfmean292.4664001464844
summarycsfmedian280.26861572265625
summarycsfn8944.0
summarycsfp05111.3714973449707
summarycsfp95505.40397644042974
summarycsfstdv124.3836898803711
summarygmk0.22288162231693542
summarygmmad57.84809112548828
summarygmmean627.1498413085938
summarygmmedian625.981201171875
summarygmn29056.0
summarygmp05529.1339416503906
summarygmp95730.3463134765625
summarygmstdv60.661155700683594
summarywmk1.4246900065488726
summarywmmad52.30588912963867
summarywmmean998.090576171875
summarywmmedian1000.007568359375
summarywmn153699.0
summarywmp05898.3248046875
summarywmp951087.7540527343751
summarywmstdv58.317298889160156
tpmoverlapcsf0.2034771740436554
tpmoverlapgm0.5275136828422546
tpmoverlapwm0.5352588295936584
wm2max0.6838831743426766

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum59cb8aceedf84a4d81e482c3529534d0
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.